Shin-biology regulated by protein lifetime

Grant-in-Aid for Transformative Research Areas (A) FY2023–FY2027, MEXT Japan
Shin-biology regulated
by protein lifetime

We aim to solve this bottleneck by establishing large-scale protein lifetime measurement methods and manipulation techniques to achieve Shin-biology.

Proteins are essential functional elements of living organisms, and the functions of cells and tissues are determined by the proteome, which consists of tens of thousands of different types of proteins. Proteins are synthesized based on genetic information, but the correlation between the amount of mRNA and translation and the amount of protein is low, and post-translational regulation, especially by proteolysis, is essential. Individual proteins have different lifetimes, ranging from a few minutes to several years. Several laws have been proposed to determine protein lifetime. Still, while they can explain the lifetime of some proteins, they do not understand the lifetime of most proteins, and the mechanism by which proteins determine their lifetime after they are produced remains unclear.

Old and New Mysteries of Protein Lifetimes

In addition to protein synthesis, protein degradation is an important mechanism that determines protein composition. Research on the mechanisms of intracellular protein degradation has progressed over the past 30 years, and basic mechanisms such as the ubiquitin-proteasome system and autophagy have been identified as large-scale degradation systems. In addition, various proteases exist inside and outside the cell and play essential roles in physiological functions. However, the mechanism by which protein lifetime is determined is still poorly understood. For example, the half-life of proteins in rat neurons varies widely, from less than minutes to more than 10 days. The observation that intracellular proteins have different lifetimes was recognized in 1978 and has been a mystery for half a century. Several laws have been proposed to determine protein lifetimes. The N-terminal rule was first published in 1986, followed by the C-terminal rule and a similar rule called the PEST sequence. However, while these rules can explain the lifetimes of some proteins, they do not explain the lifetimes of most proteins, and the mechanism by which protein lifetimes are determined remains unknown. The mechanism by which protein lifetimes are determined remains unresolved.

Head Investigator Shigeo Murata Professor, Ph.D and MD
Graduate School of Pharmaceutical Sciences, The University of Tokyo
Administrative Group
Shin-biology regulated by protein lifetime
Head Investigator Shigeo Murata
Graduate School of Pharmaceutical Sciences, The University of Tokyo
  • A01-1
    Protein lifetime dynamics in cell and organ senescence
    Shigeo Murata
    Graduate School of Pharmaceutical Sciences, The University of Tokyo
  • A01-2
    Protein Lifespan Dynamics in Neural Stem Cells
    Taeko Kobayashi
    Graduate School of Biostudies, Kyoto University
  • A01-3
    Alteration of protein lifetime in vascular stenosis
    Daisuke Morito
    Showa University School of Medicine
  • A02-1
    Mechanism of how the proteasome determines protein lifetime
    Yasushi Saeki
    Division of Protein Metabolism, The Institute of Medical Science, The University of Tokyo
  • A02-2
    Regulation of the protein lifespan by the ubiquitin code
    Fumiaki Ohtake
    Hoshi University
  • A02-3
    Regulation of lifespan of organelle component proteins
    Koji Yamano
    Medical Research Institute, Tokyo Medical and Dental University
  • A03-1
    Development of Large-Scale Measurement Methods for Protein Lifetimes and Elucidation of Lifetime Control Principles
    Yasushi Ishihama
    Graduate School of Pharmaceutical Sciences, Kyoto University
  • A03-2
    Controlling protein lifespan with the auxin-inducible degron technology
    Masato Kanemaki
    National Institute of Genetics
  • A03-3
    Controlling the lifetime of proteins using small-molecule degraders
    Yosuke Demizu
    Division of Organic Chemistry, National Institute of Health Sciences

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