タンパク質寿命が制御するシン・バイオロジー

Shin-biology regulated by protein lifetime
文部科学省 科学研究費補助金 学術変革領域研究(A) 令和5年〜9年度

Planned Research

A03
Prediction of protein lifetime with large protein language models
Toshiyuki Tanaka
Professor, Graduate School of Informatics, Kyoto University
http://www-adsys.sys.i.kyoto-u.ac.jp/en/
researchmap: https://researchmap.jp/tt_t_tanaka
Abstract

Lifetime of proteins can be regarded as being determined by complex processes affected by various factors. On the other hand, it has recently been reported that protein lifetime is correlated with information of the sequences of the gene and amino acids, so that it is important to explore to what extent the sequences bear information about the protein lifetime. The objective of this research is to investigate the information extent in protein sequence information about protein lifetime, via making use of large protein language models constructed via deep learning as feature extractors, and studying the task of predicting protein lifetime on the basis of the extracted features of the protein sequence data.

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  3. Kasai T., Ono S., Koshiba S., Yamamoto M., Tanaka T., Ikeda S., & Kigawa T. (2020) Amino-acid selective isotope labeling enables simultaneous overlapping signal decomposition and information extraction from NMR spectra. J Biomol NMR. 74, 125–137
  4. Akasaka T., Fujimoto K., Yamamoto T., Okada T., Fushumi Y., Yamamoto A., Tanaka T., & Togashi K. (2016) Optimization of regularization parameters in compressed sensing of magnetic resonance angiography: Can statistical image metrics mimic radiologists’ perception? PLoS One. 10.1371/journal.pone.0146548