Protein Lifetime Regulation by Linear Poly-ubiquitination
Associate Professor, Department of Medical Biochemistry, Graduate School of Medicine, Osaka Metropolitan University
https://www.omu.ac.jp/med/medbiochem/english/
researchmap: https://researchmap.jp/oikawadaisuke/?lang=japanese
Linear poly-ubiquitin chains, which are formed via the N-terminal methionine of ubiquitin, have been known as a unique non-degradable ubiquitin modification. Recently, we have found that linear ubiquitination contributes to proteasomal degradation and aggregate formation of aggregating proteins, mainly TDP-43, and that the abnormal accumulation of linear ubiquitin chains shifts the lifetime of a specific group of proteins. These suggest that linear ubiquitination may function as a novel post-translational modification that regulates protein lifetime. In this study, we will clarify the basic rules of the protein substrates whose lifetime is regulated by the presence or absence of linear poly-ubiquitin chain by comprehensive search and information analysis. Also, we will search for novel adaptor proteins and analyze known model substrates, to elucidate the molecular mechanism of linear poly-ubiquitin chain-dependent protein lifetime regulation.
- Zhang Q., Terawaki S., Oikawa D., Okina Y., Usuki Y., Ito H., & Tokunaga F. (2022) Suppression of Linear Ubiquitination Ameliorates Cytoplasmic Aggregation of Truncated TDP-43. Cells. 11, 2398
- Oikawa D., Gi M., Kosako H., Shimizu K., Takahashi H., Shiota M., Hosomi S., Komakura K., Wanibuchi H., Tsuruta D., Sawasaki T., & Tokunaga F. (2022) OTUD1 deubiquitinase regulates NF-κB- and KEAP1-mediated inflammatory responses and reactive oxygen species-associated cell death pathways. Cell Death Dis. 13, 694
- Oikawa D., Sato Y., Ito H., & Tokunaga F. (2020) Linear Ubiquitin Code: Its Writer, Erasers, Decoders, Inhibitors, and Implications in Disorders. Int J Mol Sci. 10.3390/ijms21093381
- Oikawa D., Sato Y., Ohtake F., Komakura K., Hanada K., Sugawara K., Terawaki S., Mizukami Y., Phuong H. T., Iio K., Obika S., Fukushi M., Irie T., Tsuruta D., Sakamoto S., Tanaka K., Saeki Y., Fukai S., & Tokunaga F. (2020) Molecular bases for HOIPINs-mediated inhibition of LUBAC and innate immune responses. Commun Biol. 3, 163
- Nakazawa S., Oikawa D., Ishii R., Ayaki T., Takahashi H., Takeda H., Ishitani R., Kamei K., Takeyoshi I., Kawakami H., Iwai K., Hatada I., Sawasaki T., Ito H., Nureki O., & Tokunaga F. (2016) Linear ubiquitination is involved in the pathogenesis of optineurin-associated amyotrophic lateral sclerosis. Nat Commun. 7, 12547