Understanding quality control mechanisms of degradation apparatus that determine protein lifetime
Associate professor, Juntendo University Graduate School of Medicine
https://www.juntendo.ac.jp/graduate/laboratory/labo/kikan_saibou/index_eng.html
researchmap: https://researchmap.jp/qazwsxedcrfvtgbyhnuj
Proteasomes and lysosomes are key determinants of intracellular protein lifetime. However, it is largely unknown how the function of these degradation apparatus is maintained. Ubiquitination is involved in various cellular processes including proteins degradation and autophagy. It has been long thought that targets of ubiquitination are limited to proteins. We have recently discovered that endo/lysosomal phospholipids are ubiquitinated. In this study, I aim to uncover the molecular mechanism of lipid ubiquitination and its role in the regulation of lysosomal functions. To understand the quality control mechanism of proteasome, I focus on autophagic degradation of proteasomes and investigate its molecular mechanism and role in the regulation of global protein half-life. These analyses will further advance our understanding of the regulatory mechanisms of protein lifetime.
- Sakamaki J. ichi, & Mizushima N. (2023) Ubiquitination of non-protein substrates. Trends Cell Biol. 33, 991–1003
- Sakamaki J. I., & Mizushima N. (2023) Cell biology of protein–lipid conjugation. Cell Struct Funct. 48, 99–112
- Sakamaki J. ichi, & Mizushima N. (2023) Protocol to purify and detect ubiquitinated phospholipids in budding yeast and human cell lines. STAR Protoc. 10.1016/j.xpro.2022.101935
- Sakamaki J. ichi, Ode K. L., Kurikawa Y., Ueda H. R., Yamamoto H., & Mizushima N. (2022) Ubiquitination of phosphatidylethanolamine in organellar membranes. Mol Cell. 82, 3677-3692.e11
- Sakamaki J. ichi, Wilkinson S., Hahn M., Tasdemir N., O’Prey J., Clark W., Hedley A., Nixon C., Long J. S., New M., Van Acker T., Tooze S. A., Lowe S. W., Dikic I., & Ryan K. M. (2017) Bromodomain Protein BRD4 Is a Transcriptional Repressor of Autophagy and Lysosomal Function. Mol Cell. 66, 517-532.e9